[overture] Re: parallel ins
- From: "Kyle K. Chand" <chand1@xxxxxxxx>
- To: overture@xxxxxxxxxxxxx
- Date: Fri, 4 Jan 2008 16:57:31 -0800
Hi Joel,
In that case, check out $CG/ins/cmd/cicp.cmd to see what kind of options are
needed to turn on a parallel solver. You will likely want use the
"choose best iterative solver" option along with something like the parallel
bicg PETSc solver.
Kyle
On Friday 04 January 2008 16:45, Joel Guerrero wrote:
> Hi Kyle,
>
> I think I'm using the parallel version of petsc, in anycase I will check.
>
>
> Cheers,
>
> Joel
>
> ----- Original Message ----
> From: Kyle K. Chand <chand1@xxxxxxxx>
> To: overture@xxxxxxxxxxxxx
> Sent: Saturday, January 5, 2008 8:11:03 PM
> Subject: [overture] Re: parallel ins
>
>
> Hi Joel,
>
> You will need to use the parallel PETSc solvers to use the parallel ins
> code.
> If you have not built Overture with PETSc you will first need to build
> PETSc
> and then rebuild Overture.
>
> Regards,
> Kyle
>
> On Friday 04 January 2008 16:31, Joel Guerrero wrote:
> > Hi,
> >
> > So far I have been using parallel cns, which runs in parallel quite
>
> good.
>
> > Now I'm trying to use parallel ins, but I'm getting this error. Any
> > suggestion,
> >
> > joel
> >
> > initialize the solution...
> > interpolateAndApplyBoundaryConditions (start) steps=-1 t=0: number
>
> of
>
> > array ID's has increased to 684
> >
> > >>>>>Cgins::project: project the initial conditions <<<<
> >
> > $$$$$$$$$$$$$$$ Cgins: updateToMatchGrid(CompositeGrid & cg)
>
> $$$$$$$$$$$$
>
> > insBC: after generalizedDivergence: number of array ID's has
>
> increased to
>
> > 687 Oges::ERROR:serial generateMatrix called in parallel!
> >
> > Overture::abort: I am now going to purposely abort so that you can
>
> get a
>
> > traceback from a debugger [linux-p8i7:16457] *** Process received
>
> signal
>
> > ***
> > [linux-p8i7:16457] Signal: Aborted (6)
> > [linux-p8i7:16457] Signal code: (-6)
> > Oges::ERROR:serial generateMatrix called in parallel!
> >
> > Overture::abort: I am now going to purposely abort so that you can
>
> get a
>
> > traceback from a debugger [linux-p8i7:16458] *** Process received
>
> signal
>
> > ***
> > [linux-p8i7:16458] Signal: Aborted (6)
> > [linux-p8i7:16458] Signal code: (-6)
> > [linux-p8i7:16458] [ 0] [0xffffe440]
> > [linux-p8i7:16458] [ 1] /lib/libc.so.6(abort+0x101) [0xb22481e1]
> > [linux-p8i7:16458] [ 2]
>
>
> ../../../../cg_parallel.v22/ins/bin/cgins(_ZN8Overture5abortERK7aString+0x5
>
> >a) [0x807989e] [linux-p8i7:16458] [ 3]
>
>
> /home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges1
>
> >4generateMatrixERi+0x34) [0xb5b48eca] [linux-p8i7:16458] [ 4]
>
>
> /home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges1
>
> >0formMatrixERiS0_NS_23SparseStorageFormatEnumEbb+0xf73) [0xb5b489af]
> > [linux-p8i7:16458] [ 5]
>
>
> /home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN18Yale
>
> >EquationSolver5solveER27doubleCompositeGridFunctionS1_+0x184)
>
> [0xb5b8c2de]
>
> > [linux-p8i7:16458] [ 6]
>
>
> /home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges5
>
> >solveER27doubleCompositeGridFunctionS1_+0x9a) [0xb5b5a630]
> > [linux-p8i7:16458] [ 7]
>
>
> /home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgi
>
> >ns32solveForTimeIndependentVariablesER12GridFunction+0xa4b)
>
> [0xb77d3e4d]
>
> > [linux-p8i7:16458] [ 8]
>
>
> /home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgi
>
> >ns7projectER12GridFunction+0x16fe) [0xb7733da4] [linux-p8i7:16458] [
>
> 9]
>
>
> /home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_
>
> >ZN12DomainSolver18initializeSolutionEv+0x1220) [0xb74ace9e]
> > [linux-p8i7:16458] [10]
>
>
> /home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgi
>
> >ns18initializeSolutionEv+0x1e) [0xb78d6de6] [linux-p8i7:16458] [11]
>
>
> /home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_
>
> >ZN12DomainSolver5setupERKd+0x4a2d) [0xb752acd7] [linux-p8i7:16458]
>
> [12]
>
>
> /home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_
>
> >ZN12DomainSolver26setParametersInteractivelyEb+0x11b49) [0xb73cdb21]
> > [linux-p8i7:16458] [13] ../../../../cg_parallel.v22/ins/bin/cgins
> > [0x805b645] [linux-p8i7:16458] [14]
>
> /lib/libc.so.6(__libc_start_main+0xe0)
>
> > [0xb2232fe0] [linux-p8i7:16458] [15]
> > ../../../../cg_parallel.v22/ins/bin/cgins(_ZN3MPI3Win4FreeEv+0x10d)
> > [0x805acd1] [linux-p8i7:16458] *** End of error message ***
> > [linux-p8i7:16457] [ 0] [0xffffe440]
> > [linux-p8i7:16457] [ 1] /lib/libc.so.6(abort+0x101) [0xb22511e1]
> > [linux-p8i7:16457] [ 2]
>
>
> ../../../../cg_parallel.v22/ins/bin/cgins(_ZN8Overture5abortERK7aString+0x5
>
> >a) [0x807989e] [linux-p8i7:16457] [ 3]
>
>
> /home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges1
>
> >4generateMatrixERi+0x34) [0xb5b51eca] [linux-p8i7:16457] [ 4]
>
>
> /home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges1
>
> >0formMatrixERiS0_NS_23SparseStorageFormatEnumEbb+0xf73) [0xb5b519af]
> > [linux-p8i7:16457] [ 5]
>
>
> /home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN18Yale
>
> >EquationSolver5solveER27doubleCompositeGridFunctionS1_+0x184)
>
> [0xb5b952de]
>
> > [linux-p8i7:16457] [ 6]
>
>
> /home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges5
>
> >solveER27doubleCompositeGridFunctionS1_+0x9a) [0xb5b63630]
> > [linux-p8i7:16457] [ 7]
>
>
> /home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgi
>
> >ns32solveForTimeIndependentVariablesER12GridFunction+0xa4b)
>
> [0xb77dce4d]
>
> > [linux-p8i7:16457] [ 8]
>
>
> /home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgi
>
> >ns7projectER12GridFunction+0x16fe) [0xb773cda4] [linux-p8i7:16457] [
>
> 9]
>
>
> /home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_
>
> >ZN12DomainSolver18initializeSolutionEv+0x1220) [0xb74b5e9e]
> > [linux-p8i7:16457] [10]
>
>
> /home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgi
>
> >ns18initializeSolutionEv+0x1e) [0xb78dfde6] [linux-p8i7:16457] [11]
>
>
> /home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_
>
> >ZN12DomainSolver5setupERKd+0x4a2d) [0xb7533cd7] [linux-p8i7:16457]
>
> [12]
>
>
> /home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_
>
> >ZN12DomainSolver26setParametersInteractivelyEb+0x11b49) [0xb73d6b21]
> > [linux-p8i7:16457] [13] ../../../../cg_parallel.v22/ins/bin/cgins
> > [0x805b645] [linux-p8i7:16457] [14]
>
> /lib/libc.so.6(__libc_start_main+0xe0)
>
> > [0xb223bfe0] [linux-p8i7:16457] [15]
> > ../../../../cg_parallel.v22/ins/bin/cgins(_ZN3MPI3Win4FreeEv+0x10d)
> > [0x805acd1] [linux-p8i7:16457] *** End of error message ***
> > mpirun noticed that job rank 0 with PID 16457 on node linux-p8i7
>
> exited on
>
> > signal 6 (Aborted). 1 additional process aborted (not shown)
>
>
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>
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--
Kyle K. Chand
mailto:chand1@xxxxxxxx
phoneto: (925) 422 7740
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