[overture] Re: parallel ins
- From: Joel Guerrero <joegi.geo@xxxxxxxxx>
- To: overture@xxxxxxxxxxxxx
- Date: Fri, 4 Jan 2008 16:45:13 -0800 (PST)
Hi Kyle,
I think I'm using the parallel version of petsc, in anycase I will check.
Cheers,
Joel
----- Original Message ----
From: Kyle K. Chand <chand1@xxxxxxxx>
To: overture@xxxxxxxxxxxxx
Sent: Saturday, January 5, 2008 8:11:03 PM
Subject: [overture] Re: parallel ins
Hi Joel,
You will need to use the parallel PETSc solvers to use the parallel ins
code.
If you have not built Overture with PETSc you will first need to build
PETSc
and then rebuild Overture.
Regards,
Kyle
On Friday 04 January 2008 16:31, Joel Guerrero wrote:
> Hi,
>
> So far I have been using parallel cns, which runs in parallel quite
good.
> Now I'm trying to use parallel ins, but I'm getting this error. Any
> suggestion,
>
> joel
>
> initialize the solution...
> interpolateAndApplyBoundaryConditions (start) steps=-1 t=0: number
of
> array ID's has increased to 684
>
> >>>>>Cgins::project: project the initial conditions <<<<
>
> $$$$$$$$$$$$$$$ Cgins: updateToMatchGrid(CompositeGrid & cg)
$$$$$$$$$$$$
>
> insBC: after generalizedDivergence: number of array ID's has
increased to
> 687 Oges::ERROR:serial generateMatrix called in parallel!
>
> Overture::abort: I am now going to purposely abort so that you can
get a
> traceback from a debugger [linux-p8i7:16457] *** Process received
signal
> ***
> [linux-p8i7:16457] Signal: Aborted (6)
> [linux-p8i7:16457] Signal code: (-6)
> Oges::ERROR:serial generateMatrix called in parallel!
>
> Overture::abort: I am now going to purposely abort so that you can
get a
> traceback from a debugger [linux-p8i7:16458] *** Process received
signal
> ***
> [linux-p8i7:16458] Signal: Aborted (6)
> [linux-p8i7:16458] Signal code: (-6)
> [linux-p8i7:16458] [ 0] [0xffffe440]
> [linux-p8i7:16458] [ 1] /lib/libc.so.6(abort+0x101) [0xb22481e1]
> [linux-p8i7:16458] [ 2]
>
../../../../cg_parallel.v22/ins/bin/cgins(_ZN8Overture5abortERK7aString+0x5
>a) [0x807989e] [linux-p8i7:16458] [ 3]
>
/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges1
>4generateMatrixERi+0x34) [0xb5b48eca] [linux-p8i7:16458] [ 4]
>
/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges1
>0formMatrixERiS0_NS_23SparseStorageFormatEnumEbb+0xf73) [0xb5b489af]
> [linux-p8i7:16458] [ 5]
>
/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN18Yale
>EquationSolver5solveER27doubleCompositeGridFunctionS1_+0x184)
[0xb5b8c2de]
> [linux-p8i7:16458] [ 6]
>
/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges5
>solveER27doubleCompositeGridFunctionS1_+0x9a) [0xb5b5a630]
> [linux-p8i7:16458] [ 7]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgi
>ns32solveForTimeIndependentVariablesER12GridFunction+0xa4b)
[0xb77d3e4d]
> [linux-p8i7:16458] [ 8]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgi
>ns7projectER12GridFunction+0x16fe) [0xb7733da4] [linux-p8i7:16458] [
9]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_
>ZN12DomainSolver18initializeSolutionEv+0x1220) [0xb74ace9e]
> [linux-p8i7:16458] [10]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgi
>ns18initializeSolutionEv+0x1e) [0xb78d6de6] [linux-p8i7:16458] [11]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_
>ZN12DomainSolver5setupERKd+0x4a2d) [0xb752acd7] [linux-p8i7:16458]
[12]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_
>ZN12DomainSolver26setParametersInteractivelyEb+0x11b49) [0xb73cdb21]
> [linux-p8i7:16458] [13] ../../../../cg_parallel.v22/ins/bin/cgins
> [0x805b645] [linux-p8i7:16458] [14]
/lib/libc.so.6(__libc_start_main+0xe0)
> [0xb2232fe0] [linux-p8i7:16458] [15]
> ../../../../cg_parallel.v22/ins/bin/cgins(_ZN3MPI3Win4FreeEv+0x10d)
> [0x805acd1] [linux-p8i7:16458] *** End of error message ***
> [linux-p8i7:16457] [ 0] [0xffffe440]
> [linux-p8i7:16457] [ 1] /lib/libc.so.6(abort+0x101) [0xb22511e1]
> [linux-p8i7:16457] [ 2]
>
../../../../cg_parallel.v22/ins/bin/cgins(_ZN8Overture5abortERK7aString+0x5
>a) [0x807989e] [linux-p8i7:16457] [ 3]
>
/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges1
>4generateMatrixERi+0x34) [0xb5b51eca] [linux-p8i7:16457] [ 4]
>
/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges1
>0formMatrixERiS0_NS_23SparseStorageFormatEnumEbb+0xf73) [0xb5b519af]
> [linux-p8i7:16457] [ 5]
>
/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN18Yale
>EquationSolver5solveER27doubleCompositeGridFunctionS1_+0x184)
[0xb5b952de]
> [linux-p8i7:16457] [ 6]
>
/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges5
>solveER27doubleCompositeGridFunctionS1_+0x9a) [0xb5b63630]
> [linux-p8i7:16457] [ 7]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgi
>ns32solveForTimeIndependentVariablesER12GridFunction+0xa4b)
[0xb77dce4d]
> [linux-p8i7:16457] [ 8]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgi
>ns7projectER12GridFunction+0x16fe) [0xb773cda4] [linux-p8i7:16457] [
9]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_
>ZN12DomainSolver18initializeSolutionEv+0x1220) [0xb74b5e9e]
> [linux-p8i7:16457] [10]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgi
>ns18initializeSolutionEv+0x1e) [0xb78dfde6] [linux-p8i7:16457] [11]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_
>ZN12DomainSolver5setupERKd+0x4a2d) [0xb7533cd7] [linux-p8i7:16457]
[12]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_
>ZN12DomainSolver26setParametersInteractivelyEb+0x11b49) [0xb73d6b21]
> [linux-p8i7:16457] [13] ../../../../cg_parallel.v22/ins/bin/cgins
> [0x805b645] [linux-p8i7:16457] [14]
/lib/libc.so.6(__libc_start_main+0xe0)
> [0xb223bfe0] [linux-p8i7:16457] [15]
> ../../../../cg_parallel.v22/ins/bin/cgins(_ZN3MPI3Win4FreeEv+0x10d)
> [0x805acd1] [linux-p8i7:16457] *** End of error message ***
> mpirun noticed that job rank 0 with PID 16457 on node linux-p8i7
exited on
> signal 6 (Aborted). 1 additional process aborted (not shown)
>
>
>
>
>
>
>
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--
Kyle K. Chand
mailto:chand1@xxxxxxxx
phoneto: (925) 422 7740
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