[mira_talk] Re: eukaryotic cDNA: assembler parameterization pipeline
- From: Jan Paces <hpaces@xxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Thu, 04 Jun 2009 11:52:05 +0200
hi alexie,
Alexie Papanicolaou wrote:
> I've written a short pipeline for parameterization of MIRA for cDNA data.
>
> Essentially, it launches MIRA and Newbler with an array of parameters
> (from a simple config file) and saves the user from defining many times.
> Once they finish the script conducts a BLASTX approach to identity
> contig quality. It's all pretty automated so i when i come to work in
> the morning my run has finished :-)
it looks useful. can you, please, point me where to download it?
thanks,
jan
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