On Thursday 04 June 2009 11:52:05 Jan Paces wrote: > hi alexie, > > Alexie Papanicolaou wrote: > > I've written a short pipeline for parameterization of MIRA for cDNA data. > > > > Essentially, it launches MIRA and Newbler with an array of parameters > > (from a simple config file) and saves the user from defining many times. > > Once they finish the script conducts a BLASTX approach to identity > > contig quality. It's all pretty automated so i when i come to work in > > the morning my run has finished :-) > > it looks useful. can you, please, point me where to download it? > > thanks, > > jan Hi: I'm also interested in looking at how your have done it. By the way I'm also storing (or trying to) ESTs and unigenes in to a Chado db. I'm writting a script to go from the caf file to the chado db in one go. Best regards, -- Jose M. Blanca Postigo Instituto Universitario de Conservacion y Mejora de la Agrodiversidad Valenciana (COMAV) Universidad Politecnica de Valencia (UPV) Edificio CPI (Ciudad Politecnica de la Innovacion), 8E 46022 Valencia (SPAIN) Tlf.:+34-96-3877000 (ext 88473) -- You have received this mail because you are subscribed to the mira_talk mailing list. For information on how to subscribe or unsubscribe, please visit http://www.chevreux.org/mira_mailinglists.html