[mira_talk] Re: convert_project non-IUPAC
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Thu, 1 Nov 2012 00:36:33 +0100
On Oct 31, 2012, at 20:52 , "Sahl, Jason" <JSahl@xxxxxxxxxxxxxxxxx> wrote:
> convert_project -f caf -t fasta -r C -x 200 -y 5 K1461_out.caf
> K1461_caf_filter
>
> I'm trying to force non-IUPAC bases with the "-r C" flag, but after
> filtering, the IUPAC bases are still there. I have tried both the maf and
> caf files with Mira 3.4 and 3.95. This is a non-hybrid assembly on a single
> isolate. I should be able to force non-IUPAC consensus even if I didn't set
> that flag in the manifest file, correct?
I'd say that this looks like a bug in "-r C" *sigh* Would you have a small
config to send me as test?
B.
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