[mira_talk] Re: Regression testing
- From: Robert Bruccoleri <bruc@xxxxxxxxxxxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Tue, 04 Jan 2011 15:59:07 -0500
Dear Bastien,
Only one thread was used in this regression test.
If I can make the time, I will file a bug report.
Regards,
Bob
Bastien Chevreux wrote:
On Dienstag 04 Januar 2011 Robert Bruccoleri wrote:
Dear Mira Colleagues,
I am building Mira 3.2.1 on a different platform than I normally
use, and I have written a couple of short regression tests to confirm
that Mira is working properly.
However, I'm running into an amusing problem -- the change in
platform causes the assembled sequence to be generated in reverse
complement as compared to the original platform. Is there any way to
cause Mira to apply some specific (and arbitrary rule) so that the
choice of strand is consistent across platforms?
Every non-deterministic behaviour of MIRA should go away if used with only one
thread (-GE:not=1).
If not, it's a bug and should be filed :-)
B.
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