[mira_talk] Please consider
- From: monithamohan harilkumar <moniharil@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Wed, 15 May 2013 13:28:27 +0200
Hello bastien,
Afetr resolving all the errors before in the config file , I had finally
left mira to run on April 30 which finished finally on May 12th but with
error ..:(
I really wish you could help me with this,
ERROR, in the output txt file
Thank you for noticing that this is *NOT* a crash, but a
controlled program stop.
CWD: /tmp1/monithesis/mira/mira3/mira4
Thank you for noticing that this is *NOT* a crash, but a
controlled program stop.
Fatal error (may be due to problems of the input data or parameters):
"Could not write anymore to skimhit save5. Disk full? Changed permissions?"
->Thrown: void Skim::selectPotentialHitsForSave2(const int8 direction,
const uint3
2 actreadid, cfh_threaddata_t & cfhd)
->Caught: void Skim::threadloop(const uint32 threadnr)
Aborting process, probably due to error in the input data or
parametrisation.
Please check the output log for more information.
For help, please write a mail to the mira talk mailing list.
Subscribing / unsubscribing to mira talk, see:
//www.freelists.org/list/mira_
talk
Fatal error (may be due to problems of the input data or parameters):
"Could not write anymore to skimhit save5. Disk full? Changed
permissions?"CWD:
->Thrown: /tmp1/monithesis/mira/mira3/mira4void
Skim::selectPotentialHitsForSave2(
const int8 direction, const uint32 actreadid, cfh_threaddata_t & cfhd)
->Caught: void Skim::threadloop(const uint32 threadnr)
Aborting process, probably due to error in the input data or
parametrisation.
Please check the output log for more information.
For help, please write a mail to the mira talk mailing list.
Subscribing / unsubscribing to mira talk, see:
//www.freelists.org/list/mira_
talk
Thank you for noticing that this is *NOT* a crash, but a
controlled program stop.
CWD: /tmp1/monithesis/mira/mira3/mira4
Thank you for noticing that this is *NOT* a crash, but a
controlled program stop.
Fatal error (may be due to problems of the input data or parameters):
"Could not write anymore to skimhit save5. Disk full? Changed permissions?"
->Thrown: void Skim::selectPotentialHitsForSave2(const int8 direction,
const uint3
2 actreadid, cfh_threaddata_t & cfhd)
->Caught: void Skim::threadloop(const uint32 threadnr)
Aborting process, probably due to error in the input data or
parametrisation.
Please check the output log for more information.
For help, please write a mail to the mira talk mailing list.
Subscribing / unsubscribing to mira talk, see:
//www.freelists.org/list/mira_
talk
CWD: /tmp1/monithesis/mira/mira3/mira4
Thank you for noticing that this is *NOT* a crash, but a
controlled program stop.
Fatal error (may be due to problems of the input data or parameters):
****Also I found out tht it created files terabytes in the tmp folder.....I
really don't understand what to do next***
*#manifest file for mira4*
project=mira4
job=mapping,genome,accurate
parameters = -GE:not=32\
COMMON_SETTINGS -AS:nop=1\
-MI:somrnl=0\
-SK:mnr=no:mmhr=1\
SOLEXA_SETTINGS -CO:msr=no
readgroup=illuminaassembly
data = mira4_backbone_in.fna
as_reference
strain = mira4_bft
parameters = COMMON_SETTINGS -DI:trt = /tmp2/tmp
default_qual = 30
readgroup = solexareads
data = /ctx/tmp1/monithesis/mira/mira3/mira4/mira41_in.solexa.fastq
/ctx/tmp1/mon
ithesis/mira/mira3/mira4/mira42_in.solexa.fastq
technology = solexa
templatesize= 250 750 infoonly
segment_placement= ---> <--- infoonly
strain = mira4_sol
"Could not write anymore to skimhit save5. Disk full? Changed permissions?"
->Thrown: void Skim::selectPotentialHitsForSave2(const int8 direction,
const uint3
2 actreadid, cfh_threaddata_t & cfhd)
->Caught: void Skim::threadloop(const uint32 threadnr)
Aborting process, probably due to error in the input data or
parametrisation.
Please check the output log for more information.
For help, please write a mail to the mira talk mailing list.
Subscribing / unsubscribing to mira talk, see:
//www.freelists.org/list/mira_
talk
CWD: /tmp1/monithesis/mira/mira3/mira4
Thank you for noticing that this is *NOT* a crash, but a
controlled program stop.
**Also I there was no output file was produced, instead there was a hidden
output txt file , I had run mira using command "nohup mira
mira4_manifest.conf >$log4_assembly.txt"..however i did not get this
log4_assembly.txt file , instead i got a hidden .txt file.
Please guide me,
Monitha
"
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