I am getting hash tags in contig editer but no colour code is available.
Sequence having all kinds of tags have same colour. Thanks Hoefler for your
suggestion I may need it in future cases.
On 6 October 2015 at 19:46, Chris Hoefler <hoeflerb@xxxxxxxxx> wrote:
You need to update the gap5 tag file with the Mira tags.
cat {MIRA_PREFIX}/support/GTAGDB >> {STADEN_PREFIX}/share/staden/etc/GTAGDB
You will likely need administrator access to do this. Restart gap5 and you
should see all of the Mira tags.
On Mon, Oct 5, 2015 at 11:47 PM, Rameez Mj <rameez03online@xxxxxxxxx>
wrote:
I did an assembly with a manifest file which start like this
Project = 1247
Job = genome,denovo,accurate
parameters = -GE:not=4
parameters = -NW:cac=warn
I made a gap5 database from CAF output file. But there is no colour tag
available in gap5.All reads appear in a purple colour throughout the
sequence. What is happening should I invoke mira to tag wile assebly
separately?
--
Chris Hoefler, PhD
Postdoctoral Research Associate
Straight Lab
Texas A&M University
2128 TAMU
College Station, TX 77843-2128
