You need to update the gap5 tag file with the Mira tags.
cat {MIRA_PREFIX}/support/GTAGDB >> {STADEN_PREFIX}/share/staden/etc/GTAGDB
You will likely need administrator access to do this. Restart gap5 and you
should see all of the Mira tags.
On Mon, Oct 5, 2015 at 11:47 PM, Rameez Mj <rameez03online@xxxxxxxxx> wrote:
I did an assembly with a manifest file which start like this
Project = 1247
Job = genome,denovo,accurate
parameters = -GE:not=4
parameters = -NW:cac=warn
I made a gap5 database from CAF output file. But there is no colour tag
available in gap5.All reads appear in a purple colour throughout the
sequence. What is happening should I invoke mira to tag wile assebly
separately?
