[mira_talk] Make us check a part of results
- From: Kenta SHIRASAWA <shirasaw@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Mon, 15 Jun 2009 19:05:47 +0900
Dear Bastien,
We are now assembling Sanger, solexa, and 454 reads using mira_2.9.45xl,
and have 3 askings.
1)
We will use a mira_out.txt output for a further analysis. We are
happy if MIRA makes a result txt file one by one contig, or adds a
created contig to a result txt file, because we can check a part of
results without waiting for finishing whole assemblings.
2)
Can you estimate how long time does MIRA take for finishing an
assemble 500,000 454-reads (ca. 200 Mb) with the options "-fasta
-job=denovo,est,draft,454 -notraceinfo -SB:lsd=yes -SK:pr=95 -SK:mnr=yes
-OUT:ort=yes"?
Our machine (64bit linux, 2 GHz CPU, 128 GB memory) has been running
for more than a week.
3)
Please tell us a difference between conting headers, e.g., mira_c#
and mira_lrc#.
Regards,
Kenta Shirasawa
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