[mira_talk] Re: MIRA / large contigs
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Wed, 14 May 2014 22:15:34 +0200
On 14 May 2014, at 22:07 , Martin MOKREJŠ <mmokrejs@xxxxxxxxx> wrote:
> […]
> Um, for EST projects I would propose going for 2000 only. 5kb is too much.
> Did you say 5kb is for genome assemblies only? ;-)
As Sabrina had genome assembly specified in her manifest, I based my answer on
that.
> Can one decrease the 50% threshold (for EST projects …)?
There’s no “large contig” data generated by MIRA for EST/RNASeq projects as
this make no sense at all: contigs built for genes expressed 10000x lower than
the highest expressed genes are still valid contigs (most of the time anyway).
B.
--
You have received this mail because you are subscribed to the mira_talk mailing
list. For information on how to subscribe or unsubscribe, please visit
http://www.chevreux.org/mira_mailinglists.html
Other related posts:
