[mira_talk] MIRA / large contigs
- From: Sabrina rodriguez <sabrina.rodriguez@xxxxxxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Tue, 13 May 2014 14:01:38 +0200
Hi,
I am new to MIRA ; I have run some analyses on Ion torrent data with
MIRA with the following manifest file example:
project = test
job = genome,denovo,accurate
parameters = IONTOR_SETTINGS
readgroup = DataFoIonUnpaired
data = /path/test.fastq
technology = iontor
In some cases, eventhough I obtain large contigs (> 500bp) as observed
from the <project>_info_assembly.txt file in the <project>_info
directory; in the <project>_result directory, no "LargeContigs" files
were generated.
In one example, I have obtained contig lengths going from 120 bp to 4543.
In a second example, I have obtained contigs length between 107 and 9432 bp.
But, no Large contigs files.
Does anyone have an idea why I do not have large contig files in the
"result" directory?
Thanks in advance.
Best regards,
Sabrina.
--
You have received this mail because you are subscribed to the mira_talk mailing
list. For information on how to subscribe or unsubscribe, please visit
http://www.chevreux.org/mira_mailinglists.html
Other related posts:
