[mira_talk] Re: How does Mira determine quality scores?
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Sat, 1 Aug 2009 12:31:12 +0200
On Samstag 01 August 2009 Lionel Guy wrote:
> Dear Bastien and Davide,
>
> We are (or rather David Hesselbom is) currently closely investigating
> how both Newbler and Mira are performing with respect to homopolymer
> errors. We would also be glad to try a test version with an
> alternative algorithm, and will of course share the results!
Hmmm, which alternative algorithm? The ">=66% gap equals to always gap"
version? That's in
http://www.chevreux.org/tmp/mira_3rc1b1_dev_linux-gnu_x86_64_static.tar.bz2
Or would you want a configurable threshold (50%, 80% etc.)? I could make one,
I've got some time this WE.
Regards,
Bastien
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