On Donnerstag 30 Juli 2009 Davide Sassera wrote: > [...] > I would love to try a version with this algorithm, so for once I can > help instead of just using the software. > I cannot guarantee on how fast I will be able to give you some results > as I'm very busy, but I'll do my best. http://www.chevreux.org/tmp/mira_3rc1b1_dev_linux-gnu_x86_64_static.tar.bz2 I'm putting some last finishing touches on version 3 in the next two weeks, if I hear back from you before release that the base calling gets better I'll include that change :-) > Reasoning from another point of view, couldn't Mira give quality score > to gaps also? it could either be a fixed number or something like the > mean value of the two bases around the gap? > maybe this does not make sense, what do you think? Ummm ... MIRA already does exactly this?! At least it's intended to do so and from I what I can see after a quick check in the unpadded fasta of a test project, it does. Where are you missing the quality value for the gap? Regards, Bastien -- You have received this mail because you are subscribed to the mira_talk mailing list. For information on how to subscribe or unsubscribe, please visit http://www.chevreux.org/mira_mailinglists.html