[mira_talk] Re: Filtering out crappy sequence - try my sff2phd

  • From: Bastien Chevreux <bach@xxxxxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Thu, 5 Apr 2012 21:01:25 +0200

On Apr 5, 2012, at 1:01 , Markiyan Samborskyy wrote:
> I may suggest to try my sff2phd converter, which has a configurable
> crap reads removal and can output in phd, fasta or fastq (Q+64)
> format. It is included in the latest version of the consed (22).

Whoa. Nice thing, albeit two questions immediately arise:
- was there a reason not to use / extend sff_extract?
- why Q+64? Even Illumina saw the light and moved to the standard Q+33

> PS: Dear Basrien, if you like it - feel free to add it to the mira
> contrib, so other users can benefit from it.

Thanks for that. I'm on travel right now, I'll have a look at that when I 
return :-)

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