[mira_talk] Re: Extracting reads from a mapping asembly
- From: Chris Hoefler <hoeflerb@xxxxxxxxx>
- To: "mira_talk@xxxxxxxxxxxxx" <mira_talk@xxxxxxxxxxxxx>
- Date: Tue, 20 May 2014 08:46:09 -0500
Sorry, should have read this more carefully. If the -M option isn't working,
another way is to use the read list in the _info directory with the -n option.
> On May 20, 2014, at 12:23 AM, Chayan Roy <chayan.roy93@xxxxxxxxx> wrote:
>
>
> Hi,
>
> I have performed a mapping assembly with unpaired iotorrent reads. After the
> assembly I tried to extract the reads but not the contigs (or the consensus)
> with
>
> "miraconvert -f caf -t fastq -M sourcefile.caf file.fastq"
>
> but along with the reads it also extracted the contigs as well which is
> creating problem when i tried to perform a denovo with the extracted reads.
> Can any one please tell me what is the correct option for doing so?
>
> Best
>
> Chayan roy
> --
> CHAYAN ROY
>
>
>
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