[mira_talk] Re: Editing/ cleanup of MIRA assembly with gap5

  • From: Andrej Benjak <abenjak@xxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Mon, 14 Dec 2015 08:59:02 +0100

I used to use tg_index on the original CAF file and have never had problems. Could you try?

cheers,
Andrej

On 12/13/2015 06:58 AM, Chitra P wrote:

Hi,

I know this is slightly off-topic for the MIRA list, but I would be grateful for any help with this.

I want to edit a MIRA assembly with gap5 ( I have installed staden-2.0.0b9.i686 on a Ubuntu 14.04). At present, I am able to load but unable to edit the sequences.

This is what I did :
I converted the MIRA maf and fasta files to sam

then used tg_index to convert it to a gap5 database

I am able to view the sequences but unable to edit the sequence. In my terminal get the following error message when I try editing

*'D8YB9:08803:07440': couldn't open*


Thanks,

PC

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