[mira_talk] Re: Does MIRA maintain pairing in the cleaned reads?
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Fri, 2 May 2014 09:49:31 +0200 (CEST)
> On May 2, 2014 at 9:37 AM Torben Nielsen <torben@xxxxxxxxxx> wrote:
> If I run
>
> miraconvert -C readpool.maf myclippeddata.fastq
>
> in the checkpoint directory, I know I get cleaned reads back. But will they
> still be paired?
Yes.
> Also, if I give the “-X int”, I understand that reads that are below the
> length given will be dropped, but if one of a pair is lost that way, will the
> other one be kept or dropped?
The other one will be kept.
B.
Other related posts:
