[mira_talk] Does MIRA maintain pairing in the cleaned reads?
- From: Torben Nielsen <torben@xxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Thu, 1 May 2014 21:37:08 -1000
If I run
miraconvert -C readpool.maf myclippeddata.fastq
in the checkpoint directory, I know I get cleaned reads back. But will they
still be paired? Also, if I give the “-X int”, I understand that reads that are
below the length given will be dropped, but if one of a pair is lost that way,
will the other one be kept or dropped?
Thanks, Torben
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