[mira_talk] Re: Call for testing: MIRA 3.2.1.17 and Ion Torrent
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Mon, 16 May 2011 19:11:35 +0200
On May 16, 2011, at 15:12 , Tony Travis wrote:
> On 16/05/11 13:21, Bastien Chevreux wrote:
>> The "log" directory is no more, long live the "tmp" directory.
> Should that not be the /var/tmp directory?
Ahm, no. What I mean are the <projectname>_assembly/<projectname>_d_log
respectively *_d_tmp directories.
> My three-week(!) MIRA assembly of 20x106 paired-end Solexa + 270x104 454
> reads has just crashed when you announced your call for testing ;-)
Usual question from my side: log please :-)
> I've just tried your development version, but it crashed:
>> Internal logic/programming/debugging error (*sigh* this should not have
>> happened).
>> Please file a bug report on http://sourceforge.net/apps/trac/mira-assembler/
>>
>> "While trying to set the name of read
>> <trace>
>> Encountered character with ASCII code 32. T
>> It is probably due to your input data, but normally, MIRA should have caught
>> that earlier!"
Not a crash, but certainly not normal either. Here too: log please. I think I
have an idea what could have cause the bug, maybe I will also need a sample of
the data.
B.
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