[overture] parallel ins
- From: Joel Guerrero <joegi.geo@xxxxxxxxx>
- To: overture@xxxxxxxxxxxxx
- Date: Sat, 16 Aug 2008 15:45:20 -0700 (PDT)
Hi,
I'm trying to run ins in parallel, but I'm getting this error. I found it
really odd, because this case I already ran it in parallel a time ago but now
is not running, any idea?
cheers
joel
***userDefinedInitialConditionsCleanup: delete arrays
>>> t = 0.000e+00, dt = 8.25e-03, cpu = 3.13e-03 seconds (0 steps)
p : (min,max)=( 1.000000e+00, 1.000000e+00)
u : (min,max)=( 0.000000e+00, 1.000000e+00)
v : (min,max)=( 0.000000e+00, 0.000000e+00)
Divergence: divMax/vorMax = 0.00e+00 divl2Norm/vorMax=0.00e+00 vorMax=1.37e+03
***Save grid in the show file: numberOfComponentGrids=1
GridCollectionData:put:INFO: put the gridDistributionList.
gridDistributionList.size()=1
GridDistributionList:put: numberOfElements=1
readLineFromCommandFile:End of file or a null line was read.
Message: end-of-file reached in command file
**************** implicitPC: still need correct initial values for du/dt(t-dt)
******
**************** use values from du/dt(t)
******
testConsistency:ERROR: label=Internal_Partitioning_Type::updateGhostBoundaries :
myid=0, dimension d=0: parti bounds=[98,153], local-array bounds=[-4,51]
myid=0, dimension d=1: parti bounds=[-2,55], local-array bounds=[-4,53]
myid=0, dimension d=3: parti bounds=[1,3], local-array bounds=[0,2]
error
Overture::abort: I am now going to purposely abort so that you can get a
traceback from a debugger
[linux-p8i7:11629] *** Process received signal ***
[linux-p8i7:11629] Signal: Aborted (6)
[linux-p8i7:11629] Signal code: (-6)
[linux-p8i7:11629] [ 0] [0xffffe440]
[linux-p8i7:11629] [ 1] /lib/libc.so.6(abort+0x101) [0xb22291e1]
[linux-p8i7:11629] [ 2]
../../../parallel/openmpi_version/cg.v22/ins/bin/cgins(_ZN8Overture5abortERK7aString+0x5a)
[0x808665e]
[linux-p8i7:11629] [ 3]
/home/joegi/cfd/overture/parallel/openmpi_version/Overture.v22/lib/libOverture.so(_Z15testConsistencyRK11doubleArrayPKc+0x19f)
[0xb3e88319]
[linux-p8i7:11629] [ 4]
/home/joegi/cfd/overture/parallel/openmpi_version/Overture.v22/lib/libOverture.so(_ZN26Internal_Partitioning_Type21updateGhostBoundariesERK11doubleArrayRK17doubleSerialArray+0x32)
[0xb49e0e96]
[linux-p8i7:11629] [ 5]
/home/joegi/cfd/overture/parallel/openmpi_version/Overture.v22/lib/libOverture.so(_ZNK11doubleArray21updateGhostBoundariesEv+0x5e)
[0xb49a6000]
[linux-p8i7:11629] [ 6]
/home/joegi/cfd/overture/parallel/openmpi_version/Overture.v22/lib/libOverture.so(_ZN11doubleArrayaSEd+0x375)
[0xb4985ecb]
[linux-p8i7:11629] [ 7]
/home/joegi/cfd/overture/parallel/openmpi_version/cg.v22/ins/../ins/lib/libCgins.so(_ZN5Cgins46applyBoundaryConditionsForImplicitTimeSteppingER24doubleMappedGridFunctionS1_S1_dii+0x1416)
[0xb7830d66]
[linux-p8i7:11629] [ 8]
/home/joegi/cfd/overture/parallel/openmpi_version/cg.v22/ins/../common/lib/libCgCommon.so(_ZN12DomainSolver46applyBoundaryConditionsForImplicitTimeSteppingER12GridFunction+0x160)
[0xb74b6040]
[linux-p8i7:11629] [ 9]
/home/joegi/cfd/overture/parallel/openmpi_version/cg.v22/ins/../common/lib/libCgCommon.so(_ZN12DomainSolver24advanceImplicitMultiStepERdS0_RiS1_i+0x8906)
[0xb74bea5c]
[linux-p8i7:11629] [10]
/home/joegi/cfd/overture/parallel/openmpi_version/cg.v22/ins/../common/lib/libCgCommon.so(_ZN12DomainSolver7advanceERd+0x2bc7)
[0xb749f2a7]
[linux-p8i7:11629] [11]
/home/joegi/cfd/overture/parallel/openmpi_version/cg.v22/ins/../common/lib/libCgCommon.so(_ZN12DomainSolver5solveEv+0x77)
[0xb73bcf07]
[linux-p8i7:11629] [12] ../../../paralleltestConsistency:ERROR:
label=Internal_Partitioning_Type::updateGhostBoundaries :
myid=1, dimension d=0: parti bounds=[150,205], local-array bounds=[48,103]
myid=1, dimension d=1: parti bounds=[-2,55], local-array bounds=[-4,53]
myid=1, dimension d=3: parti bounds=[1,3], local-array bounds=[0,2]
error
Overture::abort: I am now going to purposely abort so that you can get a
traceback from a debugger
[linux-p8i7:11630] *** Process received signal ***
[linux-p8i7:11630] Signal: Aborted (6)
[linux-p8i7:11630] Signal code: (-6)
[linux-p8i7:11630] [ 0] [0xffffe440]
[linux-p8i7:11630] [ 1] /lib/libc.so.6(abort+0x101) [0xb22991e1]
[linux-p8i7:11630] [ 2]
../../../parallel/openmpi_version/cg.v22/ins/bin/cgins(_ZN8Overture5abortERK7aString+0x5a)
[0x808665e]
[linux-p8i7:11630] [ 3]
/home/joegi/cfd/overture/parallel/openmpi_version/Overture.v22/lib/libOverture.so(_Z15testConsistencyRK11doubleArrayPKc+0x19f)
[0xb3ef8319]
[linux-p8i7:11630] [ 4]
/home/joegi/cfd/overture/parallel/openmpi_version/Overture.v22/lib/libOverture.so(_ZN26Internal_Partitioning_Type21updateGhostBoundariesERK11doubleArrayRK17doubleSerialArray+0x32)
[0xb4a50e96]
[linux-p8i7:11630] [ 5]
/home/joegi/cfd/overture/parallel/openmpi_version/Overture.v22/lib/libOverture.so(_ZNK11doubleArray21updateGhostBoundariesEv+0x5e)
[0xb4a16000]
[linux-p8i7:11630] [ 6]
/home/joegi/cfd/overture/parallel/openmpi_version/Overture.v22/lib/libOverture.so(_ZN11doubleArrayaSEd+0x375)
[0xb49f5ecb]
[linux-p8i7:11630] [ 7]
/home/joegi/cfd/overture/parallel/openmpi_version/cg.v22/ins/../ins/lib/libCgins.so(_ZN5Cgins46applyBoundaryConditionsForImplicitTimeSteppingER24doubleMappedGridFunctionS1_S1_dii+0x1416)
[0xb78a0d66]
[linux-p8i7:11630] [ 8]
/home/joegi/cfd/overture/parallel/openmpi_version/cg.v22/ins/../common/lib/libCgCommon.so(_ZN12DomainSolver46applyBoundaryConditionsForImplicitTimeSteppingER12GridFunction+0x160)
[0xb7526040]
[linux-p8i7:11630] [ 9]
/home/joegi/cfd/overture/parallel/openmpi_version/cg.v22/ins/../common/lib/libCgCommon.so(_ZN12DomainSolver24advanceImplicitMultiStepERdS0_RiS1_i+0x8906)
[0xb752ea5c]
[linux-p8i7:11630] [10]
/home/joegi/cfd/overture/parallel/openmpi_version/cg.v22/ins/../common/lib/libCgCommon.so(_ZN12DomainSolver7advanceERd+0x2bc7)
[0xb750f2a7]
[linux-p8i7:11630] [11]
/home/joegi/cfd/overture/parallel/openmpi_version/cg.v22/ins/../common/lib/libCgCommon.so(_ZN12DomainSolver5solveEv+0x77)
[0xb742cf07]
[linux-p8i7:11630] [12] ../../../parallel/openmpi_version/cg.v22/ins/bin/cgins
[0x805d3a0]
[linux-p8i7:11630] [13] /lib/libc.so.6(__libc_start_main+0xe0) [0xb2283fe0]
[linux-p8i7:11630] [14]
../../../parallel/openmpi_version/cg.v22/ins/bin/cgins(_ZN3MPI3Win4FreeEv+0x129)
[0x805c9f1]
[linux-p8i7:11630] *** End of error message ***
/openmpi_version/cg.v22/ins/bin/cgins [0x805d3a0]
[linux-p8i7:11629] [13] /lib/libc.so.6(__libc_start_main+0xe0) [0xb2213fe0]
[linux-p8i7:11629] [14]
../../../parallel/openmpi_version/cg.v22/ins/bin/cgins(_ZN3MPI3Win4FreeEv+0x129)
[0x805c9f1]
[linux-p8i7:11629] *** End of error message ***
mpirun noticed that job rank 0 with PID 11629 on node linux-p8i7 exited on
signal 6 (Aborted).
1 additional process aborted (not shown)
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