[overture] Re: parallel ins
- From: Joel Guerrero <joegi.geo@xxxxxxxxx>
- To: overture@xxxxxxxxxxxxx
- Date: Fri, 4 Jan 2008 18:28:57 -0800 (PST)
Hi kyle,
Ok, I recompiled everything again, I have the parallel version of petsc and I
did all the necessary changes, the compilation went fine, but Im still getting
the same error (same as in the previous email), so do you any idea what could
be the problem??
cheers,
joel
----- Original Message ----
From: Joel Guerrero <joegi.geo@xxxxxxxxx>
To: overture@xxxxxxxxxxxxx
Sent: Saturday, January 5, 2008 8:44:45 PM
Subject: [overture] Re: parallel ins
Hi kyle,
I just checked and now I'm getting this error, which I think is related
to the parallel version of petsc. So far I compiled overture with
petsc so I dont know what could be the problem.
cheers,
jg
initialize the solution...
interpolateAndApplyBoundaryConditions (start) steps=-1 t=0: number of
array ID's has increased to 684
>>>>>Cgins::project: project the initial conditions <<<<
$$$$$$$$$$$$$$$ Cgins: updateToMatchGrid(CompositeGrid & cg)
$$$$$$$$$$$$
Oges::buildEquationSolvers:ERROR: solver PETSc is not currently
available
You may have to copy and edit the file
Overture/Oges/buildEquationSolvers.C
and a file like PETScEquationSolver.C (if you are trying to use PETSc)
and then link the files to your application in order to get a
non-standard solver
See the Oges documentation for further details
error
Overture::abort: I am now going to purposely abort so that you can get
a traceback from a debugger
:18765] [14]
../../../../cg_parallel.v22/ins/bin/cgins(_ZN3MPI3Win4FreeEv+0x10d) [0x805acd1]
[linux-p8i7:18765] *** End of error message ***
mpirun noticed that job rank 0 with PID 18765 on node linux-p8i7 exited
on signal 6 (Aborted).
1 additional process aborted (not shown)
----- Original Message ----
From: Joel Guerrero <joegi.geo@xxxxxxxxx>
To: overture@xxxxxxxxxxxxx
Sent: Saturday, January 5, 2008 8:15:13 PM
Subject: [overture] Re: parallel ins
Hi Kyle,
I think I'm using the parallel version of petsc, in anycase I will
check.
Cheers,
Joel
----- Original Message ----
From: Kyle K. Chand <chand1@xxxxxxxx>
To: overture@xxxxxxxxxxxxx
Sent: Saturday, January 5, 2008 8:11:03 PM
Subject: [overture] Re: parallel ins
Hi Joel,
You will need to use the parallel PETSc solvers to use the parallel ins
code.
If you have not built Overture with PETSc you will first need to build
PETSc
and then rebuild Overture.
Regards,
Kyle
On Friday 04 January 2008 16:31, Joel Guerrero wrote:
> Hi,
>
> So far I have been using parallel cns, which runs in parallel quite
good.
> Now I'm trying to use parallel ins, but I'm getting this error. Any
> suggestion,
>
> joel
>
> initialize the solution...
> interpolateAndApplyBoundaryConditions (start) steps=-1 t=0: number
of
> array ID's has increased to 684
>
> >>>>>Cgins::project: project the initial conditions <<<<
>
> $$$$$$$$$$$$$$$ Cgins: updateToMatchGrid(CompositeGrid & cg)
$$$$$$$$$$$$
>
> insBC: after generalizedDivergence: number of array ID's has
increased to
> 687 Oges::ERROR:serial generateMatrix called in parallel!
>
> Overture::abort: I am now going to purposely abort so that you can
get a
> traceback from a debugger [linux-p8i7:16457] *** Process received
signal
> ***
> [linux-p8i7:16457] Signal: Aborted (6)
> [linux-p8i7:16457] Signal code: (-6)
> Oges::ERROR:serial generateMatrix called in parallel!
>
> Overture::abort: I am now going to purposely abort so that you can
get a
> traceback from a debugger [linux-p8i7:16458] *** Process received
signal
> ***
> [linux-p8i7:16458] Signal: Aborted (6)
> [linux-p8i7:16458] Signal code: (-6)
> [linux-p8i7:16458] [ 0] [0xffffe440]
> [linux-p8i7:16458] [ 1] /lib/libc.so.6(abort+0x101) [0xb22481e1]
> [linux-p8i7:16458] [ 2]
>
../../../../cg_parallel.v22/ins/bin/cgins(_ZN8Overture5abortERK7aString+0x5
>a) [0x807989e] [linux-p8i7:16458] [ 3]
>
/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges1
>4generateMatrixERi+0x34) [0xb5b48eca] [linux-p8i7:16458] [ 4]
>
/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges1
>0formMatrixERiS0_NS_23SparseStorageFormatEnumEbb+0xf73) [0xb5b489af]
> [linux-p8i7:16458] [ 5]
>
/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN18Yale
>EquationSolver5solveER27doubleCompositeGridFunctionS1_+0x184)
[0xb5b8c2de]
> [linux-p8i7:16458] [ 6]
>
/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges5
>solveER27doubleCompositeGridFunctionS1_+0x9a) [0xb5b5a630]
> [linux-p8i7:16458] [ 7]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgi
>ns32solveForTimeIndependentVariablesER12GridFunction+0xa4b)
[0xb77d3e4d]
> [linux-p8i7:16458] [ 8]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgi
>ns7projectER12GridFunction+0x16fe) [0xb7733da4] [linux-p8i7:16458] [
9]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_
>ZN12DomainSolver18initializeSolutionEv+0x1220) [0xb74ace9e]
> [linux-p8i7:16458] [10]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgi
>ns18initializeSolutionEv+0x1e) [0xb78d6de6] [linux-p8i7:16458] [11]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_
>ZN12DomainSolver5setupERKd+0x4a2d) [0xb752acd7] [linux-p8i7:16458]
[12]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_
>ZN12DomainSolver26setParametersInteractivelyEb+0x11b49) [0xb73cdb21]
> [linux-p8i7:16458] [13] ../../../../cg_parallel.v22/ins/bin/cgins
> [0x805b645] [linux-p8i7:16458] [14]
/lib/libc.so.6(__libc_start_main+0xe0)
> [0xb2232fe0] [linux-p8i7:16458] [15]
> ../../../../cg_parallel.v22/ins/bin/cgins(_ZN3MPI3Win4FreeEv+0x10d)
> [0x805acd1] [linux-p8i7:16458] *** End of error message ***
> [linux-p8i7:16457] [ 0] [0xffffe440]
> [linux-p8i7:16457] [ 1] /lib/libc.so.6(abort+0x101) [0xb22511e1]
> [linux-p8i7:16457] [ 2]
>
../../../../cg_parallel.v22/ins/bin/cgins(_ZN8Overture5abortERK7aString+0x5
>a) [0x807989e] [linux-p8i7:16457] [ 3]
>
/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges1
>4generateMatrixERi+0x34) [0xb5b51eca] [linux-p8i7:16457] [ 4]
>
/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges1
>0formMatrixERiS0_NS_23SparseStorageFormatEnumEbb+0xf73) [0xb5b519af]
> [linux-p8i7:16457] [ 5]
>
/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN18Yale
>EquationSolver5solveER27doubleCompositeGridFunctionS1_+0x184)
[0xb5b952de]
> [linux-p8i7:16457] [ 6]
>
/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges5
>solveER27doubleCompositeGridFunctionS1_+0x9a) [0xb5b63630]
> [linux-p8i7:16457] [ 7]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgi
>ns32solveForTimeIndependentVariablesER12GridFunction+0xa4b)
[0xb77dce4d]
> [linux-p8i7:16457] [ 8]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgi
>ns7projectER12GridFunction+0x16fe) [0xb773cda4] [linux-p8i7:16457] [
9]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_
>ZN12DomainSolver18initializeSolutionEv+0x1220) [0xb74b5e9e]
> [linux-p8i7:16457] [10]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgi
>ns18initializeSolutionEv+0x1e) [0xb78dfde6] [linux-p8i7:16457] [11]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_
>ZN12DomainSolver5setupERKd+0x4a2d) [0xb7533cd7] [linux-p8i7:16457]
[12]
>
/home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_
>ZN12DomainSolver26setParametersInteractivelyEb+0x11b49) [0xb73d6b21]
> [linux-p8i7:16457] [13] ../../../../cg_parallel.v22/ins/bin/cgins
> [0x805b645] [linux-p8i7:16457] [14]
/lib/libc.so.6(__libc_start_main+0xe0)
> [0xb223bfe0] [linux-p8i7:16457] [15]
> ../../../../cg_parallel.v22/ins/bin/cgins(_ZN3MPI3Win4FreeEv+0x10d)
> [0x805acd1] [linux-p8i7:16457] *** End of error message ***
> mpirun noticed that job rank 0 with PID 16457 on node linux-p8i7
exited on
> signal 6 (Aborted). 1 additional process aborted (not shown)
>
>
>
>
>
>
>
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--
Kyle K. Chand
mailto:chand1@xxxxxxxx
phoneto: (925) 422 7740
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