[mira_talk] Re: multithread
- From: Juan Pascual Anaya <jpascualanaya@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Thu, 6 Feb 2014 10:31:27 +0900
That would explain it, thanks!
On Thu, Feb 6, 2014 at 5:05 AM, Bastien Chevreux <bach@xxxxxxxxxxxx> wrote:
> On 05 Feb 2014, at 3:01 , Juan Pascual Anaya <jpascualanaya@xxxxxxxxx>
> wrote:
> > Is it my impression, or MIRA4 is not using multiple threads? Although I
> have indicated not=12 in the manifest file, MIRA4 seems to be using all the
> time only one:
>
> Then you missed the parts where it uses more than one :-)
>
> > I am basically using the same manifest as for MIRA4rc05, with the same
> dataset, and MIRA4 it takes way longer to finish than 4rc05.
>
> rc5 had the bad habit of often building short contigs, way shorter than
> they should be. 4.0 fixes that. It may be that the longer run time you see
> is due to longer contigs (especially true for 454 and/or Ion data).
>
> B.
>
>
>
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--
Juan Pascual-Anaya, PhD
Research Scientist
Laboratory for Evolutionary Morphology
Center for Developmental Biology (CDB) RIKEN
2-2-3 Minatojima-minamimachi
Chuo-ku, Kobe, Hyogo 650-0047
Japan
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