[mira_talk] Re: multithread
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Wed, 5 Feb 2014 21:05:51 +0100
On 05 Feb 2014, at 3:01 , Juan Pascual Anaya <jpascualanaya@xxxxxxxxx> wrote:
> Is it my impression, or MIRA4 is not using multiple threads? Although I have
> indicated not=12 in the manifest file, MIRA4 seems to be using all the time
> only one:
Then you missed the parts where it uses more than one :-)
> I am basically using the same manifest as for MIRA4rc05, with the same
> dataset, and MIRA4 it takes way longer to finish than 4rc05.
rc5 had the bad habit of often building short contigs, way shorter than they
should be. 4.0 fixes that. It may be that the longer run time you see is due to
longer contigs (especially true for 454 and/or Ion data).
B.
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