On 26 Jun 2014, at 0:30 , Jose Huguet Tapia <jch63@xxxxxxxxxxx> wrote: > Actually my reads have been corrected with illumina reads. I used the LSC > tool. > http://www.healthcare.uiowa.edu/labs/au/LSC/ > > Can I consider those as corrected reads for MIRA? Probably (i never used LSC). But you need to declare them as high quality (PCBIOHQ). B.