[mira_talk] Re: megahubs
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Thu, 26 Jun 2014 00:24:18 +0200
On 25 Jun 2014, at 23:51 , Jose Huguet Tapia <jch63@xxxxxxxxxxx> wrote:
> Running now.
> I got a warning though
> :WARNING!!!!!!
> You are not performing a 'mapping only' assembly and the parameters
> -SK:bph=6 and -SK:hss=1
> are quite low. If SKIM takes ages, stop this assembly and restart while
> increasing these parameters.
>
> Should I continue or change the bph and hss parameters
Owww, frak! I completely missed that you are running low quality PB. Stop that,
it won’t work. MIRA currently can run only with high quality PB reads, i.e.,
corrected reads. Sorry.
B.
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