[mira_talk] Re: force MIRA to produce only singletons and no debris
- From: Robin Kramer <kodream@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Thu, 10 Mar 2011 13:44:11 -0700
Singlet is an otherwise good read, that doesn't happen to have a match.
Debris low quality clipped repeat and or Singlet.
I think the real issue, is that Mira info reported that there were no
singlets in assembly info.
Sincerely yours,
Robin
On Thu, Mar 10, 2011 at 11:31 AM, Bastien Chevreux <bach@xxxxxxxxxxxx>wrote:
> On Wednesday 09 March 2011 22:35:02 Robin Kramer wrote:
> > I just had an odd case where a read which was unalinged was moved to
> > debris.
> >
> > The log file says.
> >
> > Contig does not meet requirement of minimum reads per contig.
> > Moving 1 reads to debris and triggering additional
> >
> > Is this a singleton or debris?
>
> Before answering this ... can you tell me what your differentiation is
> between
> "singlet" and "debris"?
>
>
> B.
>
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