[mira_talk] Re: force MIRA to produce only singletons and no debris

On Jul 23, 2011, at 11:16 , Visam Gültekin wrote:
> I still can not get singlet.fasta as aoutput.. here is the command:
> 
> mira -project=s7 -fasta -job=denovo,genome,accurate,454 -notraceinfo 
> 454_SETTINGS -AS:mrpc=1 -OUT:sssip=1:stsip=1
> 
> i started to think that mira is not producing singlet file at all..

And that thought is actually correct: there is no separate singlet file. 
Singlets are part of the regular results and have a "_s" name while contigs 
have a "_c" name.

> has anyone ever got an output of singlets before?

Yes, I did, more than I wanted with 454 and Solexa data :-)

Hope that helps.

B.

Other related posts: