[mira_talk] Re: Help with assembling multiple strains, XML file
- From: Stephanie Pearl <pearlsa110@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Thu, 10 Mar 2011 15:22:02 -0500
I did not use sff_extract with "-a" -- rather, I concatenated my two
individual xml files for my two strains.
Since my reads have already been cleaned, is it even necessary for me to
include the xml files? (Could I just do indicate -notraceinfo and therefore
circumvent the problem with merging the XML files?)
On Thu, Mar 10, 2011 at 1:30 PM, Bastien Chevreux <bach@xxxxxxxxxxxx> wrote:
> On Thursday 10 March 2011 00:45:22 Stephanie Pearl wrote:
> > I'm trying to run an assembly (EST, denovo, 454) on two strains and am
> > experiencing some problems. I've merged my read, quality, and xml files
>
> Um ... yes, "merged" when speaking of XML is always a bit problematic. Did
> you
> do it by hand (I fear) or did you use sff_extract with "-a" to do that.
>
> B.
>
> --
> You have received this mail because you are subscribed to the mira_talk
> mailing list. For information on how to subscribe or unsubscribe, please
> visit http://www.chevreux.org/mira_mailinglists.html
>
Other related posts:
