I get the identical error with 9900 bp reads can you send me the link please? Rob On 05/05/2011, at 8:24 PM, Bastien Chevreux wrote: >> From: David Haase >>> Ganga Jeena <ganga.jeena@xxxxxxxxx> hat geschrieben: >>> "Read rr_####2568#### is longer than MAXREADSIZEALLOWED (29900) bases. Skim >>> cannot handle than, sorry." >>> makes it seem as if there are still few contigs with size > 29900. checkout >>> for the same and split again. >> Longest Sanger: 10000 >> So contigs greater than the threshold cannot really be the reason, right? > > Indeed, that is not the reason. Rob stumbled across a small bug which, by > coincidence, also came across very recently (two days ago). > > Possible solutions: > 1) have the reads you map be 9900 bases max, and not 10000 > 2) wait for the next release on SourceForge (probably next week) > 3) if you want, mail me and I'll send you a link to get the current > development head of MIRA where the bug has bee fixed > > Terribly sorry for the inconvenience. > > B. > > > > -- > You have received this mail because you are subscribed to the mira_talk > mailing list. For information on how to subscribe or unsubscribe, please > visit http://www.chevreux.org/mira_mailinglists.html Rob Good Ph. +61 3 8344 2347 Mob. 0434058250 Genetics Dept University of Melbourne PARKVILLE, Australia -- You have received this mail because you are subscribed to the mira_talk mailing list. For information on how to subscribe or unsubscribe, please visit http://www.chevreux.org/mira_mailinglists.html