[mira_talk] Re: What is this referring to?

  • From: Rob Good <rtgood@xxxxxxxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Fri, 6 May 2011 11:28:01 +1000

I get the identical error with 9900 bp reads can you send me the link please?
Rob
On 05/05/2011, at 8:24 PM, Bastien Chevreux wrote:

>> From: David Haase
>>> Ganga Jeena  <ganga.jeena@xxxxxxxxx> hat geschrieben:
>>> "Read rr_####2568#### is longer than MAXREADSIZEALLOWED (29900) bases. Skim 
>>> cannot handle than, sorry."
>>> makes it seem as if there are still few contigs with size > 29900. checkout 
>>> for the same and split again.
>> Longest Sanger: 10000
>> So contigs greater than the threshold cannot really be the reason, right?
> 
> Indeed, that is not the reason. Rob stumbled across a small bug which, by 
> coincidence, also came across very recently (two days ago).
> 
> Possible solutions:
> 1) have the reads you map be 9900 bases max, and not 10000
> 2) wait for the next release on SourceForge (probably next week)
> 3) if you want, mail me and I'll send you a link to get the current 
> development head of MIRA where the bug has bee fixed
> 
> Terribly sorry for the inconvenience.
> 
> B.
> 
> 
> 
> --
> You have received this mail because you are subscribed to the mira_talk 
> mailing list. For information on how to subscribe or unsubscribe, please 
> visit http://www.chevreux.org/mira_mailinglists.html

Rob Good
Ph. +61 3 8344 2347
Mob. 0434058250
Genetics Dept
University of Melbourne
PARKVILLE, Australia


--
You have received this mail because you are subscribed to the mira_talk mailing 
list. For information on how to subscribe or unsubscribe, please visit 
http://www.chevreux.org/mira_mailinglists.html

Other related posts: