Hi Bastien Did this fall of the desk? did you post a new version on sourceforge?? Cheers Rob On 06/05/2011, at 11:28 AM, Rob Good wrote: > I get the identical error with 9900 bp reads can you send me the link please? > Rob > On 05/05/2011, at 8:24 PM, Bastien Chevreux wrote: > >>> From: David Haase >>>> Ganga Jeena <ganga.jeena@xxxxxxxxx> hat geschrieben: >>>> "Read rr_####2568#### is longer than MAXREADSIZEALLOWED (29900) bases. >>>> Skim cannot handle than, sorry." >>>> makes it seem as if there are still few contigs with size > 29900. >>>> checkout for the same and split again. >>> Longest Sanger: 10000 >>> So contigs greater than the threshold cannot really be the reason, right? >> >> Indeed, that is not the reason. Rob stumbled across a small bug which, by >> coincidence, also came across very recently (two days ago). >> >> Possible solutions: >> 1) have the reads you map be 9900 bases max, and not 10000 >> 2) wait for the next release on SourceForge (probably next week) >> 3) if you want, mail me and I'll send you a link to get the current >> development head of MIRA where the bug has bee fixed >> >> Terribly sorry for the inconvenience. >> >> B. >> >> >> >> -- >> You have received this mail because you are subscribed to the mira_talk >> mailing list. For information on how to subscribe or unsubscribe, please >> visit http://www.chevreux.org/mira_mailinglists.html > > Rob Good > Ph. +61 3 8344 2347 > Mob. 0434058250 > Genetics Dept > University of Melbourne > PARKVILLE, Australia > > > -- > You have received this mail because you are subscribed to the mira_talk > mailing list. For information on how to subscribe or unsubscribe, please > visit http://www.chevreux.org/mira_mailinglists.html Rob Good Ph. +61 3 8344 2347 Mob. 0434058250 Genetics Dept University of Melbourne PARKVILLE, Australia -- You have received this mail because you are subscribed to the mira_talk mailing list. For information on how to subscribe or unsubscribe, please visit http://www.chevreux.org/mira_mailinglists.html