[mira_talk] Re: What is this referring to?

  • From: Rob Good <rtgood@xxxxxxxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Fri, 13 May 2011 17:03:04 +1000

Hi Bastien

Did this fall of the desk?
did you post a new version on sourceforge??
Cheers
Rob
On 06/05/2011, at 11:28 AM, Rob Good wrote:

> I get the identical error with 9900 bp reads can you send me the link please?
> Rob
> On 05/05/2011, at 8:24 PM, Bastien Chevreux wrote:
> 
>>> From: David Haase
>>>> Ganga Jeena  <ganga.jeena@xxxxxxxxx> hat geschrieben:
>>>> "Read rr_####2568#### is longer than MAXREADSIZEALLOWED (29900) bases. 
>>>> Skim cannot handle than, sorry."
>>>> makes it seem as if there are still few contigs with size > 29900. 
>>>> checkout for the same and split again.
>>> Longest Sanger: 10000
>>> So contigs greater than the threshold cannot really be the reason, right?
>> 
>> Indeed, that is not the reason. Rob stumbled across a small bug which, by 
>> coincidence, also came across very recently (two days ago).
>> 
>> Possible solutions:
>> 1) have the reads you map be 9900 bases max, and not 10000
>> 2) wait for the next release on SourceForge (probably next week)
>> 3) if you want, mail me and I'll send you a link to get the current 
>> development head of MIRA where the bug has bee fixed
>> 
>> Terribly sorry for the inconvenience.
>> 
>> B.
>> 
>> 
>> 
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> 
> Rob Good
> Ph. +61 3 8344 2347
> Mob. 0434058250
> Genetics Dept
> University of Melbourne
> PARKVILLE, Australia
> 
> 
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Rob Good
Ph. +61 3 8344 2347
Mob. 0434058250
Genetics Dept
University of Melbourne
PARKVILLE, Australia


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