[mira_talk] MIRA 4.0 released
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_announce@xxxxxxxxxxxxx
- Date: Sun, 2 Feb 2014 19:03:57 +0100
Dear all,
I just released MIRA 4.0 at the usual place on SourceForge:
http://sourceforge.net/projects/mira-assembler/files/MIRA/stable/
Have fun with MIRA,
Bastien
Changes from 4.0rc5 to 4.0
----------
- improvement: missing or additional backslashes in "parameters=" manifest
lines are diagnosed a bit better.
- increased max length of reads allowed in mapping to 32kb
- fine-tuning of standard parameters for PCBIOHQ reads
- fine-tuning of contig building in low-coverage areas of a contig
- fine-tuning of standard parameters for 3' polybase clipping
- bugfix: SAM output for mapping assemblies was sometimes broken (bug
uncovered by new parameter -SB:tor=yes)
- bugfix: the term "exclusion_criterion" for "segment_placement" in manifest
files was parsed wrongly.
- bugfix: miraconvert now does not munch away part of filenames separated by
dots.
- bugfix: using digital normalisation on genome assemblies led to an error,
fixed.
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