[mira_talk] Re: MIRA 4.0 released
- From: Austen Chen <cyausten@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Tue, 4 Feb 2014 15:27:47 +1030
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On Mon, Feb 3, 2014 at 4:33 AM, Bastien Chevreux <bach@xxxxxxxxxxxx> wrote:
> Dear all,
>
> I just released MIRA 4.0 at the usual place on SourceForge:
>
> http://sourceforge.net/projects/mira-assembler/files/MIRA/stable/
>
> Have fun with MIRA,
> Bastien
>
> Changes from 4.0rc5 to 4.0
> ----------
> - improvement: missing or additional backslashes in "parameters=" manifest
> lines are diagnosed a bit better.
> - increased max length of reads allowed in mapping to 32kb
> - fine-tuning of standard parameters for PCBIOHQ reads
> - fine-tuning of contig building in low-coverage areas of a contig
> - fine-tuning of standard parameters for 3' polybase clipping
> - bugfix: SAM output for mapping assemblies was sometimes broken (bug
> uncovered by new parameter -SB:tor=yes)
> - bugfix: the term "exclusion_criterion" for "segment_placement" in
> manifest
> files was parsed wrongly.
> - bugfix: miraconvert now does not munch away part of filenames separated
> by
> dots.
> - bugfix: using digital normalisation on genome assemblies led to an error,
> fixed.
>
>
>
>
> --
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