. DATABASE: INSTRUCTIONS AND TRAINING : DATABASES: MEDICAL HEALTH BIOSCIENCES BIOLOGY PSYCHOLOGY: PubMed Training Manual from NLM: Revised February, 2010 PubMed Training Manual from NLM: Revised February, 2010 <http://www.nlm.nih.gov/pubs/manuals/pm_workbook_Feb_2010.pdf> MEDLARS Management Section U.S. National Library of Medicine National Institutes of Health Department of Health and Human Services Bethesda, Maryland Table of ContentsAgenda Goals and Objectives Introduction to the U.S. National Library of Medicine The National Network of Libraries of Medicine Document Delivery NLM Technical Bulletin Consumer Information NLM Customer Service Subscribe to NLM-Announces Mailing List Introduction to PubMed (pubmed.gov) Whats in PubMed MEDLINE Citations Medical Subject Headings (MeSH Vocabulary) Subheadings Pharmacologic Action Terms Other Types of MeSH Vocabulary Practice Exercises Introduction to MeSH Building the Search Search Results Screen Automatic Term Mapping (ATM) Details screen Practice Exercises: Basic Search and ATM Related Articles Limits Phrase Searching Truncation (finding all terms that begin with a given text string) Stopword List Spell Check Feature Practice Exercises: Limits & Phrase Searching Boolean Logical Operators History Practice Exercises: Boolean Operators and History Searching with MeSH and the MeSH Database Practice Exercises: Searching with MeSH Using the Search Builder to Search by Field Finding a Specific Citation Using Search Tags -- Search Field Descriptions Journals Database Practice Exercises: Search Tags Managing the Results Display Settings Send to My NCBI Collections My Bibliography Saving the Search Saving Search Strategies with My NCBI RSS Practice Exercises: Managing the Results and Saving the Search Getting the Articles LinkOut Send to Order Additional Tools Filters My NCBI User Preferences
Clinical Queries Special Queries Health Services Research (HSR) Queries Linking to PubMed E-Utilities Review Exercises
Goals and Objectives By the end of this course, you should be able to: Understand PubMed's scope and content. Understand how the MeSH vocabulary is used to describe and retrieve citations. Build a search using MeSH and PubMed search tools (Details, Limits, History, Search Builder, etc.)Manage your results using display, sort, the Clipboard, save, print, e-mail and order features. Save your search strategies.
Customize your display (using My NCBI). Link to full-text articles and other resources. Use filters and special queries, and other PubMed/NCBI tools. Introduction to the U.S. National Library of MedicineThe United States National Library of Medicine (NLM), part of the National Institutes of Health (NIH), is the world's largest medical library. The collections of the National Library of Medicine include more than seven million books, journals, technical reports, manuscripts, microfilms, photographs, and images on medicine and related sciences, including some of the world's oldest and rarest works.
The National Network of Libraries of MedicineMedical libraries throughout the United States are joined together in a network. The purpose of the National Network of Libraries of Medicine (NN/LM) is to provide health science practitioners, investigators, educators, and administrators in the United States with timely, convenient access to biomedical and health care information resources. The network is administered by the National Library of Medicine. It consists of eight Regional Medical Libraries (major institutions under contract to NLM), more than 159 Resource Libraries (primarily at medical schools), and some 4,762 Primary Access Libraries (primarily at hospitals). The Regional Medical Libraries administer and coordinate services in the network's eight geographical regions.
NN/LM Web site: <http://nnlm.gov> Toll free phone number: 1-800-338-7657 <snip> Introduction to PubMed (pubmed.gov)NLM has been indexing the biomedical literature since 1879, to help provide health professionals access to information necessary for research, health care, and education. What was once a printed index to articles, the Index Medicus, became a database now known as MEDLINE. MEDLINE contains journal citations and abstracts for biomedical literature from around the world. Since 1996, free access to MEDLINE has been available to the public online via PubMed
NLM Home Page <http://www.nlm.nih.gov>PubMed is a database developed by the National Center for Biotechnology Information (NCBI) at the National Library of Medicine (NLM) available on the Web. PubMed is one of several databases under NCBIs Entrez retrieval system. PubMed currently includes over 19 million bibliographic citations. PubMed also has links to the full-text of articles at participating publishers Web sites, as well as biological data, sequence data, and more from other Entrez Databases and from third parties.
<snip> Whats in PubMedMost PubMed records are MEDLINE citations. Other records include those in different stages of processing (including records provided directly from the journal publisher) but destined to be MEDLINE citations. A relatively small number of records that are included in PubMed but not selected for MEDLINE.
MEDLINE CitationsPubMed provides access to MEDLINE, the National Library of Medicines premier bibliographic database containing citations and author abstracts from approximately 5,400 biomedical journals published in the United
States and in other countries.The scope of MEDLINE includes such diverse topics as microbiology, delivery of health care, nutrition, pharmacology and environmental health. The categories covered in MEDLINE include everything from anatomy, organisms, diseases, psychiatry, and psychology to the physical sciences. MEDLINE currently contains over 17 million references dating back to 1948. New material is added Tuesday through Saturday. Coverage is worldwide, but most records (about 90%) are from English-language sources or have English abstracts. Approximately 79% of the citations are included with the published abstract.
MEDLINE Journal SelectionThe Literature Selection Technical Review Committee (LSTRC) meets three times a year and considers approximately 140 titles for MEDLINE at each meeting. Final approval is made by the Director of the National Library of Medicine. Titles are considered for scope and coverage, quality of content, quality of editorial work, production quality, audience, and type of content. For more details, see the NLM Fact Sheet, MEDLINE Journal Selection, at
<http://www.nlm.nih.gov/pubs/factsheets/jsel.html> MEDLINE Basic Bibliographic CitationOne MEDLINE citation represents one journal article and is composed of fields that provide specific information (Title, Author, Language, etc.) about the journal article. The following information is generally provided:
Title of the journal article Names of the Authors Abstract published with the article Controlled Vocabulary search terms (Medical Subject Headings) Journal Source Information First Author Affiliation Language in which the article was publishedPublication Type (description of the type of article, e.g., Review, Letter, etc.)
<snip> Medical Subject Headings (MeSH Vocabulary)For a video introduction to MeSH, see Branching Out: The MeSH Vocabulary at
<http://www.nlm.nih.gov/bsd/disted/video/> What is MeSH?Acronym for Medical Subject Headings Similar to key words on other systems Used for indexing journal articles for MEDLINE and also used for cataloging books and audiovisuals Used by searchers Revised annually Gives uniformity and consistency to the indexing of the biomedical literature and is a distinctive feature of MEDLINE
MeSH Vocabulary includes four types of terms: Headings Publication Types Subheadings Supplementary Concept Records MeSH HeadingsMeSH headings represent concepts found in the biomedical literature MeSH headings and Publication Types are arranged in a hierarchical manner called the MeSH Tree Structure
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