[mira_talk] new sff_extract
- From: Jose Blanca <jblanca@xxxxxx>
- To: "mira_talk@xxxxxxxxxxxxx" <mira_talk@xxxxxxxxxxxxx>
- Date: Wed, 31 Oct 2012 10:39:01 +0100
Hi:
Sometime ago we discussed in this list the future of sff_extract. We
started working on it and we have a version that we think is working.
The sff_extract functionality has been split in two sff_extract and
split_matepairs that can be linked together with a pipe. We haven't done
extensive testing so if you use them, please let us know.
These utilities are bundled with some other little tools that we have
developed for our day to day work. They are all written in python and
they use biopython.
You can take a look at the development site:
https://github.com/JoseBlanca/seq_crumbs
Or our site:
http://bioinf.comav.upv.es/seq_crumbs/
Of course we'd love to have some feedback.
Best regards,
--
Jose M. Blanca Postigo
Instituto Universitario de Conservacion y
Mejora de la Agrodiversidad Valenciana (COMAV)
Universidad Politecnica de Valencia (UPV)
Edificio CPI (Ciudad Politecnica de la Innovacion), 8E
46022 Valencia (SPAIN)
Tlf.:+34-96-3877000 (ext 88473)
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