[mira_talk] Re: mbc=yes
- From: Robin Kramer <kodream@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Tue, 30 Nov 2010 16:47:59 -0700
OK thanks.
That is what I thought, but I get FASTA format error, so wasn't sure.
Robin
On Tue, Nov 30, 2010 at 4:35 PM, Bastien Chevreux <bach@xxxxxxxxxxxx> wrote:
> On Dienstag 30 November 2010 Robin Kramer wrote:
> > What do I name the cross_match file with XXXXX in it when using the
> > -CL:mbc=yes option?
> > I am not sure it is loading it.
>
> <projectname>_in.454.fasta
>
> Note that this will then be your real input data, ie.e, contrary to the
> SSAHA2
> / SMALT way, you lose the clipped parts completely (as they are hard masked
> with "X").
>
> Maybe you should be careful in case they're mixed lower/upper case that -
> CL:lcc does not interfere.
>
> B.
>
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