[mira_talk] mapping assembly stops without error message at "Buntifying reads" step with version 3.0.5
- From: Jorge.DUARTE@xxxxxxxxxxxx
- To: mira_talk@xxxxxxxxxxxxx
- Date: Wed, 9 Jun 2010 10:32:45 +0200
Hi,
we are having trouble runing a mapping assembly with this commad line :
/bioinfo/tools/mira/bin/mira -project=rescue
-job=mapping,genome,normal,454 -notraceinfo 454_SETTINGS -AL:mrs=95
-SK:pr=90 COMMON_SETTINGS -OUT:rld=yes -GE:not=7
-SK:mnr=yes:nrr=100:mhpr=50 -CL:pec=on -AS:sd=on:nop=3
-SB:lb=yes:bft=caf:abnc=no:lsd=yes:sbuip=0:lsd=yes
The assembly runs perfectly up to these lines (in Pass 3) from log file :
Assigning statistics values:
Localtime: Fri Jun 4 12:21:01 2010
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%]
....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|....
[90%] ....|.... [100%]
Buntifying reads (this may take a while) ... done.
and stops.
Has anyone else experienced this problem ? and knows how to solve it ?
(Bastien maybe...)
Thanks
jorge.
---
Jorge Duarte
Bioinformatics Research Engineer
BIOGEMMA - Upstream Genomics Group
Z.I. Du Brézet
8, Rue des Frères Lumière
63028 CLERMONT FERRAND Cedex 2
FRANCE
Tel : +33 (0)4 73 39 60 73
Fax : +33 (0)4 73 42 79 81
E-mail : jorge.duarte@xxxxxxxxxxxx
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