[mira_talk] Re: fasta info line info
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Sat, 10 Jul 2010 15:57:35 +0200
On Donnerstag 08 Juli 2010 Sven Klages wrote:
> when I compile some basic stats on my MIRA assemblies I do "pimp" the
> contig file containing extra info, e.g.
>
> >acccmar015-Set05_c1 len=38676 mem=1753 cov=33.36 %gc=46.02
>
> People working with just these (draft) contigs are quite grateful for this,
> not standardised but good to read ...
>
> In general FASTA specification allows for whatever "comment" in the header.
Not the worst idea. Anyone volunteering to write a Perl/Tcl/whatever script to
combine the FASTA output with the info from the *_info_contigstats.txt file?
B.
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