[mira_talk] deterministic results
- From: Giorgio Gonnella <gonnella@xxxxxxxxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Fri, 19 Oct 2012 15:30:38 +0200
Hallo Bastien,
I refer here to an email I sent you, and I move the conversation
here in MIRA-talk as it is more appropriate, as you suggested.
First of all, thank you for your answer.
I summarize for the other newsletter readers: I am using MIRA 3.4.0
with IonTorrent data and I would like to have deterministic
results, in order to test the effects of a pre-processing filter I
am implementing.
I use:
--job=denovo,genome,accurate,iontor
--notraceinfo
IONTOR_SETTINGS -ASSEMBLY:mrpc=100
COMMON_SETTINGS -GENERAL:not=1
I changed the last setting (which was not:4) after your suggestion.
However, this did not help - I still had different results on
different runs.
In your answer, you mentioned that for larger projects "you might
also need to tweak memory parameters". Do you have a suggestion on
which parameters I could try?
Best regards,
Giorgio
--
Dr. Giorgio Gonnella
Zentrum für Bioinformatik
Universität Hamburg
Bundesstraße 43
D-20146 Hamburg
Germany
Email: gonnella@xxxxxxxxxxxxxxxxxx
Web: http://www.zbh.uni-hamburg.de/gonnella
Phone: +49 (0)40 42838-7316
Fax: +49 (0)40 42838-7312
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