[mira_talk] Re: anothers letters in assemblies
- From: Lionel Guy <guy.lionel@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Thu, 8 Jul 2010 15:09:49 +0200
They are ambiguous consensus base calls, IUPAC-coded (see table 1 in
http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html)
For example, S stands for "strong" (G or C), Y for pYrimidine, M for
aMino (A or C), K for Keto (G or T), etc...
On 8 Jul 2010, at 14:57 , Laurent MANCHON wrote:
--Hello
why i obtain assemblies with letters other than ATGC:
CSTASAYCGGAAGAGCTCGTATGCGGTCTTCTGTTKGAAMMMAM*AG
what does it mean S,M,K, Y???
Laurent --
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