[mira_talk] Re: "Xs" found in EST de novo assemblies
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Tue, 13 Oct 2015 05:56:15 -0400
On 13 Oct 2015, at 2:23 , Patricia Carvajal <patriciacarvajal.mxli@xxxxxxxxx>
wrote:
I have EST, de novo assemblies and I found Xs in my unpadded contigs, how
should those Xs be interpreted in this case?
Please advise.
When posting questions like these, it is always helpful to give a tad more
detail on your data and what you actually did. I.e., the manifest file.
Anyway … am I correct in guessing you had several strains in your assembly?
Because MIRA writes X as result only in those cases, and this denotes a missing
coverage for a given strain.
B.
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