[mira_talk] Re: Mapping a sequence with MIRA
- From: Jan Paces <hpaces@xxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Mon, 15 Mar 2010 11:36:57 +0100
On 03/15/10 04:56, Federico Sanchez wrote:
> 1) /aplic/mira-3.0.0/bin/mira -fasta -project=454_muestra2
> -job=mapping,genome,normal,454 --noclipping=all --notraceinfo
> COMMON_SETTINGS -AS:sd=yes -SK:mnr=no
> -SB:lb=yes:bsn=454_muestra2_backbone_in.fasta:bbq=100:bft=fasta:abnc=yes
For mapping, I suggest to use mira-3.0.3, there were some problems with
parsing input data in version 3.0.2 a maybe lower as well, I am not sure.
As for the error with input files, you need _in.454. in the names -
as pointed out by Sven befora I sent this email ;-)
Jan
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