[mira_talk] Re: MIRA for viral metagenome
- From: Liam Elbourne <liam.elbourne@xxxxxxxxx>
- To: "mira_talk@xxxxxxxxxxxxx" <mira_talk@xxxxxxxxxxxxx>
- Date: Sat, 22 Sep 2012 13:10:20 +1000
Hi Torsten,
Far be it from me to discourage anyone from using MIRA, but wouldn't MetaVelvet
or IDBA-UD be a better bet with the dataset you're working with?
Regards,
Liam Elbourne.
On 22/09/2012, at 12:59 PM, Torsten Thomas <t.thomas@xxxxxxxxxxx> wrote:
> Hi.
>
> I have 14 viral metagenomes from seaweeds multiplexed sequenced with MiSeq
> (2x150 bp) and thinking of using MIRA to assemble it. Any suggestions for
> parameter settings?
>
> Thanks,
>
> Torsten
>
> Dr. Torsten Thomas
> Senior Lecturer
> School of Biotechnology and Biomolecular Sciences
> & Centre for Marine Bio-Innovation
> The University of New South Wales
> Sydney, NSW 2052
> Australia
> Ph + 61 (0) 2 938 53467
> Mob +61 (0) 410159525
> Fax + 61 (0) 2 938 51779
> https://research.unsw.edu.au/people/dr-torsten-thomas
>
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