[mira_talk] Re: MIRA GPU
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Thu, 4 Jun 2009 23:46:43 +0200
On Mittwoch 03 Juni 2009 Frank Huiskamp wrote:
> [...]
> Due to these limitations we have decided to make our own Smith-Waterman
> implementation on the GPU which might support backtracking but is not
> the aim of the implementation. We're trying a new approach to
> implementing SW on the GPU which hopefuly makes it faster than previous
> implementations. If backtracking will be supported I will of course keep
> you informed in case you are interested in combining the GPU with MIRA.
Hi Frnk,
thanks for having looked into it.
Once you have something up and running ... please drop me (or this list) a
line as this is really most interesting stuff and certainly worth to be
monitored.
Best,
Bastien
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