[mira_talk] Re: MIRA 4.0.1 released
- From: Adrian Pelin <apelin20@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Fri, 09 May 2014 11:31:34 -0400
Was 4.0.2 released? I must have missed the email, I was on vacation.
I can see the statics on sourceforge.
Thank you,
Adrian
On 4/9/2014 3:03 PM, Bastien Chevreux wrote:
Dear all,
I just released MIRA 4.0.1 at the usual place on SourceForge:
http://sourceforge.net/projects/mira-assembler/files/MIRA/stable/
This would be a simple maintenance release with a number of nifty improvements
if it were not for an important bugfix to prevent mapping mode to sometimes
edit away bases on the reference sequence. Upgrade to this version is therefore
recommended for all users.
Have fun with MIRA,
Bastien
4.0.1
-----
- improvement: drastically improved mapping speed of reads belonging to
strains which are far away from reference
- improvement: RNA sequences (having U instead of T) can now be read
natively. U bases are automatically converted to T.
- improvement: mirabait can now work with multiple input files
- improvement: functionality to change prefix of reads on the fly while
loading data. Keyword: 'rename_prefix' in the manifest file
- improvement: build on OSX now does not delete OSXstatlibs directory
- bugfix: in mapping assemblies, bases of the reference could be edited away
on very rare occasions.
- bugfix: GFF3 files with phase information could result in wrong exon
boundaries
- bugfix: MIRA can now be installed in filesystem paths which contain a space
- other small improvements and changes, mainly in error reporting and file
conversion
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