[mira_talk] Re: Issue with caf2gap after an hybrid assembly
- From: GEISER Céline <celine.geiser@xxxxxxxx>
- To: "<mira_talk@xxxxxxxxxxxxx>" <mira_talk@xxxxxxxxxxxxx>
- Date: Mon, 1 Oct 2012 10:53:47 +0000
Hi,
Here they are:
DNA : 8940314-1
nCATCAGAAACTCCCAAGGTAGTACAAGAAGAAGTGATAGCAACCAAAGCT
BaseQuality : 8940314-1
0 30 30 30 30 30 30 30 30 30 30 30 30 30 30 30 30 30 30 30 30 30 30 30 30 30 30
30 30 30 30
30 30 30 30 30 30 30 30 30 30 30 30 30 30 30 30 30 30 30 30
Sequence : 8940314-1
Is_read
Padded
Template "8940314-1"
Strand Forward
Clipping QUAL 2 51
Align_to_SCF 1 51 1 51
Tag MINF 1 1 "ST=Solexa"
I don't know is line 6 refer really to the line or the sequence.....
Thank you
Céline
Le 28 sept. 2012 à 21:05, Bastien Chevreux <bach@xxxxxxxxxxxx> a écrit :
> On Sep 28, 2012, at 9:40 , GEISER Céline wrote:
>> Thanks for your answer. I uploaded the original to a new folder to be sure
>> every try of caf2gap are removed and tried again. Still 2 error messages
>> come:
>> file will not open for function r
>> and ace file parse error line 6: No object name after class name: qq:
>
>
> Can you please paste the first 20 lines ("head -20 file") of the file you are
> trying to convert?
>
> B.
>
>
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