[mira_talk] Re: IonTorrent v3.0 output

  • From: Bastien Chevreux <bach@xxxxxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Tue, 11 Sep 2012 15:00:04 +0200 (CEST)

On September 11, 2012 at 2:28 PM Sebastian Juenemann
<jueneman@xxxxxxxxxxxxxxxxxxxxxxxx> wrote:
> i wanna give some information on that topic too since i've also already
> processed PGM TS3.0 data. LifeTech already has altered the SFF output in
> such way that its not possible to extract raw sequencing data from the
> files, i.e. the quailty clipping points in the sff header are not used
> anymore to label 5' adaptor/quality trim points.

Ion devs are are aware that they broke something. If you want to crank up the
heat up a notch, just write them and ask (nicely!) to fix SFF output until
something better comes along :-)

B.

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