[mira_talk] Re: About 454 reads
- From: Jordi Durban <jordi.durban@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Tue, 8 Feb 2011 20:41:37 +0100
Ok.
We have a hundred 454 reads which belong to a given previously identified
protein from the same organism. They align to a known reference sequence in
different places. According to this, we thought that their assembly in
several contigs could be a raw estimation of the number of genes since
non-overlap contigs could be considered 2 different genes (or maybe exons?)
and those reads in a single contig could belong to the same gene. What do
you think about that? Maybe we are trying to do a clustering process and
MIRA isn't the best tool to do that.
Regards,
2011/2/8 Bastien Chevreux <bach@xxxxxxxxxxxx>
> On Tuesday 08 February 2011 18:27:59 Jordi Durban wrote:
> > But what about using some clustering scripts??
>
> Uhm ... it's not entirely clear to me what your question is? Care to
> elaborate?
>
> B.
>
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Jordi
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