[mira_talk] Re: questions about statistics
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Mon, 21 Dec 2009 12:27:16 +0100
On Donnerstag 17 Dezember 2009 Dong Zhang wrote:
> I have some questions about statistics after assembly.
> Here is the information from “info_assembly.txt”.
Hello Dong,
The assignment of reads to debris or singlets and whether or not they are put
into the final result is messy, the statistics numbers about this sometimes
even wrong.
It seems that people doing mostly genome assemblies don't care about these
numbers and people doing EST assemblies care a lot and I've gotten increasing
reports about this. It's a part which has been neglected in development and
was overrun by changes in other parts of the algorithms, it needs to be
redone.
E.g. and if memory serves right, reads that fall out during pre-processing
(clipping etc.) are not even accounted for in debris.
This whole thing os on the rehaul list for the 3.1 development.
Regards,
Bastien
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