[mira_talk] Re: Mira mailing list
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Mon, 10 Jan 2011 19:42:27 +0100
On Montag 10 Januar 2011 Sandrine Moreira wrote:
> The technical suport suggest they could either :
> - Work on the parallelization of the code
> - Implement the "checkpoint" functionnality (to stop and restart the
> assembly after 7 days)
Is that a help offer? Whomever wants to add to MIRA is very welcome, though
I'll note that there's a reason these two functions are not fully implemented
yet: they're not easy to implement and it'll at least a couple of weeks to
implement (and test!) either one.
> Before investing too much time on one of these solutions, does anyone begin
> working on one (both ?!) of these points ? Bastien ?
> Bastien, I read on the doc that you are planning to work on these points,
> did you already do something in this direction ?
Both points are currently on hold, I have a couple of other things with higher
priority on my list atm. The basics for checkpointing are there (MAF is a
result of it), but then I needed to shift focus when I saw that there was more
to it than I wanted.
> BTW, I would be also interested by a small dataset to test our
> developements. If you have one to suggest ...
For that I suppose that any bacterial Sanger data set from the NCBI trace
archive should work pretty well. I'd have to search for one though, all the
ones I had I lost a couple of weeks ago.
B.
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